A C D E F G H I L M O P R S T U V W X

A

AlamarBlueMetabolicAssayDataAnalyzer - class edu.asu.cri.MirkE.util.AlamarBlueMetabolicAssayDataAnalyzer.

AlamarBlueMetabolicAssayDataAnalyzer(MirkE) - Constructor for class edu.asu.cri.MirkE.util.AlamarBlueMetabolicAssayDataAnalyzer

preferred constructor

actionPerformed(ActionEvent) - Method in class edu.asu.cri.MirkE.gui.EventDispatcher

process an event /** process an event

actionPerformed(ActionEvent) - Method in class edu.asu.cri.MirkE.gui.MenuActionListener

Action performed

actionPerformed(ActionEvent) - Method in class edu.asu.cri.MirkE.gui.PlateWellPropertySelectionWidget

add(MeasuredValue) - Method in class edu.asu.cri.MirkE.dataStructures.MeasuredValue

add a MeasuredValue to this and return the sum (if it exists)

add(UnitValue) - Method in class edu.asu.cri.MirkE.dataStructures.MeasuredValue

add a MeasuredValue to this and return the sum (if it exists)

addChildItem(MenuItem) - Method in class edu.asu.cri.MirkE.menu.MenuList

Adds new child menu item

addChildItem(MenuList) - Method in class edu.asu.cri.MirkE.menu.MenuList

Adds new child menu list

addDataPoint(DataPoint) - Method in class edu.asu.cri.MirkE.dataStructures.DataPointCategory

addPlateViewListener(PlateViewEventListener) - Method in class edu.asu.cri.MirkE.gui.PlateView

Add a listener to be notified of changes in an instance of the PlateView

addTabPanel(String) - Method in class edu.asu.cri.MirkE.gui.PlateWellPropertySelectionWidget

append(Throwable) - Method in class edu.asu.cri.MirkE.trace.MirkE_ExceptionHandler

append an exception message to the list of exceptions and refresh the view XXXX

C

Client - class edu.asu.cri.MirkE.Client.

Client() - Constructor for class edu.asu.cri.MirkE.Client

changedUpdate(DocumentEvent) - Method in class edu.asu.cri.MirkE.gui.PlateWellPropertySelectionWidget

close() - Method in class edu.asu.cri.MirkE.gui.EventDispatcher

colorModel - Variable in class edu.asu.cri.MirkE.MirkE

Comment for colorModel

columnNumberToColumnLabel(int) - Method in class edu.asu.cri.MirkE.dataStructures.DataSet

columnNumberToColumnLabel(int) - Method in class edu.asu.cri.MirkE.gui.PlateView

computeAndDisplayPerWellMeans() - Method in class edu.asu.cri.MirkE.util.PerWellDataAnalyzer

computeGrowthCurves() - Method in class edu.asu.cri.MirkE.util.GrowthCurveDataAnalyzer

this method needs *a lot* of work (and really should be made internal / pure Java)

computeMetabolicPercentConverted() - Method in class edu.asu.cri.MirkE.util.MetabolicAssayDataAnalyzer

computePlateDimensions() - Method in class edu.asu.cri.MirkE.dataStructures.DataSet

Determine and set the numberOfRows and numberOfColumns of the plate // TODO - refactor this out into another class (probably a subclass of DataSet -> MultiwellPlateDataSet)

convertTo(double, Unit) - Method in class edu.asu.cri.MirkE.dataStructures.Unit

Method converTo converts the given amount of this unit to its corresponding value measured with the other unit

createAndShow() - Method in class edu.asu.cri.MirkE.gui.MainFrame

create the JFrame, populate the JMenuBar and Pane then show the window

createAndShow() - Method in class edu.asu.cri.MirkE.util.MetabolicAssayDataAnalyzer

createMenuBarFromXml() - Method in class edu.asu.cri.MirkE.gui.MainFrame

Returns Swing menubar for the menu.xml configured

createPlateViewGUI() - Method in class edu.asu.cri.MirkE.gui.PlateView

createPlateWellPropertySelectionWidgetGUI() - Method in class edu.asu.cri.MirkE.gui.PlateWellPropertySelectionWidget

createUnit(String) - Static method in class edu.asu.cri.MirkE.dataStructures.Unit

createUnit(String, double, double, Unit) - Static method in class edu.asu.cri.MirkE.dataStructures.Unit

createUnit(String, String, double, double, Unit) - Static method in class edu.asu.cri.MirkE.dataStructures.Unit

D

DataAnalyzer - class edu.asu.cri.MirkE.util.DataAnalyzer.

DataAnalyzer() - Constructor for class edu.asu.cri.MirkE.util.DataAnalyzer

DataPoint - class edu.asu.cri.MirkE.dataStructures.DataPoint.

A DataPoint represents a single, atomic set of measurements.

DataPoint() - Constructor for class edu.asu.cri.MirkE.dataStructures.DataPoint

DataPointCategory - class edu.asu.cri.MirkE.dataStructures.DataPointCategory.

A collection of related DataPoints TODO - would be *very* nice if categories would automatically update themselves when necessary

DataPointCategory() - Constructor for class edu.asu.cri.MirkE.dataStructures.DataPointCategory

default (0-parameter) constructor

DataPointCategory(String, String) - Constructor for class edu.asu.cri.MirkE.dataStructures.DataPointCategory

constructor

DataPointCategoryFactory - class edu.asu.cri.MirkE.dataStructures.DataPointCategoryFactory.

Simple utility class to prevent duplication of Observable objects TODO - depreciate / remove this class by using features of Hibernate with a non-unique key (like DataPointCategory.categoryName)

DataPointCategoryFactory() - Constructor for class edu.asu.cri.MirkE.dataStructures.DataPointCategoryFactory

default constructor

DataPointCategoryFactory(DataSet) - Constructor for class edu.asu.cri.MirkE.dataStructures.DataPointCategoryFactory

constructor

DataSet - class edu.asu.cri.MirkE.dataStructures.DataSet.

DataSet - a JDBC database / Hibernate backed data store provides a HQL searchable collection of DataPoints TODO - for now, this is really a MultiWellPlateDataSet; need to refactor the DataSet from MultiWellPlateDataSet so this can be used for other applications

DataSet() - Constructor for class edu.asu.cri.MirkE.dataStructures.DataSet

default constructor - create a hsqldb database in memory and initialize the tables for Hibernate based object persistance

DataSetColorModel - class edu.asu.cri.MirkE.gui.DataSetColorModel.

DataSetColorModel() - Constructor for class edu.asu.cri.MirkE.gui.DataSetColorModel

Default constructor

DataSetTest - class edu.asu.cri.MirkE.dataStructures.DataSetTest.

DataSetTest(String) - Constructor for class edu.asu.cri.MirkE.dataStructures.DataSetTest

Constructor for DataSetTest.

delete(Object) - Method in class edu.asu.cri.MirkE.dataStructures.DataSet

remove an Object from the DataSet

divide(MeasuredValue) - Method in class edu.asu.cri.MirkE.dataStructures.MeasuredValue

divide this by a MeasuredValue and return the result

E

EventDispatcher - class edu.asu.cri.MirkE.gui.EventDispatcher.

EventDispatcher(MirkE) - Constructor for class edu.asu.cri.MirkE.gui.EventDispatcher

constructor for an EventDispatcher for a specific instance of MirkE

EventDispatcher() - Constructor for class edu.asu.cri.MirkE.gui.EventDispatcher

Empty constructor for event despatcher

edu.asu.cri.MirkE - package edu.asu.cri.MirkE

edu.asu.cri.MirkE.dataStructures - package edu.asu.cri.MirkE.dataStructures

edu.asu.cri.MirkE.exceptions - package edu.asu.cri.MirkE.exceptions

edu.asu.cri.MirkE.gui - package edu.asu.cri.MirkE.gui

edu.asu.cri.MirkE.io - package edu.asu.cri.MirkE.io

edu.asu.cri.MirkE.menu - package edu.asu.cri.MirkE.menu

edu.asu.cri.MirkE.trace - package edu.asu.cri.MirkE.trace

edu.asu.cri.MirkE.util - package edu.asu.cri.MirkE.util

entry(String, String) - Method in class edu.asu.cri.MirkE.trace.MirkELogger

log the information of the method entry joinpoint

equals(Object) - Method in class edu.asu.cri.MirkE.dataStructures.DataPoint

equals(Object) - Method in class edu.asu.cri.MirkE.dataStructures.Magnitude

equals(Object) - Method in class edu.asu.cri.MirkE.dataStructures.MeasuredValue

equals(Object) - Method in class edu.asu.cri.MirkE.dataStructures.Unit

equals(Object) - Method in class edu.asu.cri.MirkE.dataStructures.UnitValue

equals(Object) - Method in class edu.asu.cri.MirkE.exceptions.MirkEApplicationException

Determines if the given instance is the same as this instance based on its content.

equals(Object) - Method in class edu.asu.cri.MirkE.exceptions.MirkEFileNotFoundException

Determines if the given instance is the same as this instance based on its content.

equals(Object) - Method in class edu.asu.cri.MirkE.exceptions.MirkEIOException

Determines if the given instance is the same as this instance based on its content.

equals(Object) - Method in class edu.asu.cri.MirkE.exceptions.MirkESystemException

Determines if the given instance is the same as this instance based on its content.

error(String, String) - Method in class edu.asu.cri.MirkE.trace.MirkELogger

log the information of the method entry joinpoint

exit(String, String) - Method in class edu.asu.cri.MirkE.trace.MirkELogger

log the information of the method entry joinpoint

F

find(String) - Method in class edu.asu.cri.MirkE.dataStructures.DataSet

execute a database query on the DataSet

firePlateViewUpdated() - Method in class edu.asu.cri.MirkE.gui.PlateView

Notify all listeners that the PlateView has changed (TODO - add finer-grain notification so listeners don't need to update everything on a change event)

G

GrowthCurveDataAnalyzer - class edu.asu.cri.MirkE.util.GrowthCurveDataAnalyzer.

GrowthCurveDataAnalyzer() - Constructor for class edu.asu.cri.MirkE.util.GrowthCurveDataAnalyzer

parameter free constructor

GrowthCurveDataAnalyzer(MirkE) - Constructor for class edu.asu.cri.MirkE.util.GrowthCurveDataAnalyzer

getAccessKeyStroke() - Method in class edu.asu.cri.MirkE.menu.MenuItem

Returns access key stroke

getAccessKeyStroke() - Method in class edu.asu.cri.MirkE.menu.MenuList

Returns access key stroke

getCategoryName() - Method in class edu.asu.cri.MirkE.dataStructures.DataPointCategory

getCategoryName() - Method in class edu.asu.cri.MirkE.dataStructures.PlateWellCategory

getCategoryNames() - Method in class edu.asu.cri.MirkE.dataStructures.DataSet

getCategorySet() - Method in class edu.asu.cri.MirkE.dataStructures.DataPointCategory

getCategoryType() - Method in class edu.asu.cri.MirkE.dataStructures.DataPointCategory

getChildItems() - Method in class edu.asu.cri.MirkE.menu.MenuList

Returns all the client items

getClassName() - Method in class edu.asu.cri.MirkE.menu.MenuItem

Returns class name

getConfiguration() - Method in class edu.asu.cri.MirkE.dataStructures.DataSet

get the Hibernate configuration

getConnection() - Method in class edu.asu.cri.MirkE.dataStructures.DataSet

return the SQL database connection

getCurrentDirectory() - Static method in class edu.asu.cri.MirkE.gui.MirkeContext

Returns current directory

getDataPointCategory(String, String) - Method in class edu.asu.cri.MirkE.dataStructures.DataPointCategoryFactory

getDataPointCategoryFactory() - Method in class edu.asu.cri.MirkE.dataStructures.DataSet

getDataSet() - Method in class edu.asu.cri.MirkE.MirkE

getDataSet() - Method in class edu.asu.cri.MirkE.dataStructures.DataPointCategoryFactory

getDataSet() - Method in class edu.asu.cri.MirkE.util.ObservableFactory

getDescriptorMap() - Method in class edu.asu.cri.MirkE.dataStructures.DataPoint

Deprecated.

getErrorMapRequired() - Static method in class edu.asu.cri.MirkE.trace.MirkE_ExceptionHandler

A new instance of mirke has been created so we need a new map for the errors generated by this instance

getEventDispatcher() - Method in class edu.asu.cri.MirkE.MirkE

getId() - Method in class edu.asu.cri.MirkE.dataStructures.DataPoint

getId() - Method in class edu.asu.cri.MirkE.dataStructures.DataPointCategory

getId() - Method in class edu.asu.cri.MirkE.dataStructures.Magnitude

getId() - Method in class edu.asu.cri.MirkE.dataStructures.Observable

getId() - Method in class edu.asu.cri.MirkE.dataStructures.PlateDescription

getId() - Method in class edu.asu.cri.MirkE.dataStructures.PlateWellCategory

getId() - Method in class edu.asu.cri.MirkE.dataStructures.PlateWellDataPoint

getId() - Method in class edu.asu.cri.MirkE.dataStructures.PlateWellDescriptor

getId() - Method in class edu.asu.cri.MirkE.dataStructures.Unit

getId() - Method in class edu.asu.cri.MirkE.dataStructures.UnitValue

getInstance() - Static method in class edu.asu.cri.MirkE.trace.MirkELoggerFactory

getInstance() - Static method in class edu.asu.cri.MirkE.trace.MirkE_ExceptionHandler

Class method returns a new instance of MirkE_ExceptionHandler

getMainFrame() - Method in class edu.asu.cri.MirkE.MirkE

getMeasuredPlateRowColumnVector() - Method in class edu.asu.cri.MirkE.dataStructures.DataSet

getMenuList() - Static method in class edu.asu.cri.MirkE.menu.MenuXMLParser

Returns the menu list by parsing the menu xml file that is configured in mirke.properties file

getMessage(String) - Static method in class edu.asu.cri.MirkE.util.MirkeMessages

Returns the locale specific message for the given key

getMethodName() - Method in class edu.asu.cri.MirkE.menu.MenuItem

Returns method name

getMirke() - Method in class edu.asu.cri.MirkE.gui.EventDispatcher

getMirke() - Method in class edu.asu.cri.MirkE.gui.MainFrame

getMirke() - Static method in class edu.asu.cri.MirkE.gui.MirkeContext

returns mirke object

getMirke() - Method in class edu.asu.cri.MirkE.gui.PlateView

getMirke() - Method in class edu.asu.cri.MirkE.gui.WellButton

getMirke() - Method in class edu.asu.cri.MirkE.util.DataAnalyzer

getMyMessage() - Method in class edu.asu.cri.MirkE.exceptions.MirkESystemException

getName() - Method in class edu.asu.cri.MirkE.dataStructures.Magnitude

getName() - Method in class edu.asu.cri.MirkE.dataStructures.Observable

getName() - Method in class edu.asu.cri.MirkE.menu.MenuItem

returns item name

getName() - Method in class edu.asu.cri.MirkE.menu.MenuList

returns item name

getNameKey() - Method in class edu.asu.cri.MirkE.menu.MenuItem

returns item name key

getNameKey() - Method in class edu.asu.cri.MirkE.menu.MenuList

returns item name key

getNumberOfColumns() - Method in class edu.asu.cri.MirkE.dataStructures.DataSet

getNumberOfColumns() - Method in class edu.asu.cri.MirkE.dataStructures.PlateDescription

getNumberOfRows() - Method in class edu.asu.cri.MirkE.dataStructures.DataSet

getNumberOfRows() - Method in class edu.asu.cri.MirkE.dataStructures.PlateDescription

getObservable(String) - Method in class edu.asu.cri.MirkE.util.ObservableFactory

getObservableFactory() - Method in class edu.asu.cri.MirkE.dataStructures.DataSet

getObservableName() - Method in class edu.asu.cri.MirkE.dataStructures.PlateWellDataPoint

getObservableToMeasuredValueMap() - Method in class edu.asu.cri.MirkE.dataStructures.DataPoint

get a Map mapping from Observables to corresponding MeasuredValues

getObservables() - Method in class edu.asu.cri.MirkE.dataStructures.DataSet

getObservationFromObservable(Object) - Method in class edu.asu.cri.MirkE.dataStructures.DataPoint

getObservedUnits() - Method in class edu.asu.cri.MirkE.dataStructures.PlateWellDataPoint

getObservedValue() - Method in class edu.asu.cri.MirkE.dataStructures.PlateWellDataPoint

getPlateColumn() - Method in class edu.asu.cri.MirkE.dataStructures.PlateWellCategory

getPlateColumn() - Method in class edu.asu.cri.MirkE.dataStructures.PlateWellDataPoint

getPlateColumn() - Method in class edu.asu.cri.MirkE.dataStructures.PlateWellDescriptor

getPlateColumnLabel() - Method in class edu.asu.cri.MirkE.gui.WellButton

getPlateIdentifier() - Method in class edu.asu.cri.MirkE.dataStructures.PlateDescription

getPlateIdentifier() - Method in class edu.asu.cri.MirkE.dataStructures.PlateWellCategory

getPlateIdentifier() - Method in class edu.asu.cri.MirkE.dataStructures.PlateWellDataPoint

getPlateIdentifier() - Method in class edu.asu.cri.MirkE.dataStructures.PlateWellDescriptor

getPlateIdentifiers() - Method in class edu.asu.cri.MirkE.dataStructures.DataSet

getPlateRow() - Method in class edu.asu.cri.MirkE.dataStructures.PlateWellCategory

getPlateRow() - Method in class edu.asu.cri.MirkE.dataStructures.PlateWellDataPoint

getPlateRow() - Method in class edu.asu.cri.MirkE.dataStructures.PlateWellDescriptor

getPlateRowLabel() - Method in class edu.asu.cri.MirkE.gui.WellButton

getPlateView() - Method in class edu.asu.cri.MirkE.gui.PlateViewEvent

getPlateWellType() - Method in class edu.asu.cri.MirkE.dataStructures.PlateWellDescriptor

getProperty(String) - Static method in class edu.asu.cri.MirkE.util.MirkeProperties

Returns the property value for the given key

getSelectableParameter() - Method in class edu.asu.cri.MirkE.gui.PlateView

getSelectableParameter() - Method in class edu.asu.cri.MirkE.gui.WellButton

getSession() - Method in class edu.asu.cri.MirkE.dataStructures.DataSet

getSessionFactory() - Method in class edu.asu.cri.MirkE.dataStructures.DataSet

get the Hibernate sessionFactory

getStandardDeviation() - Method in class edu.asu.cri.MirkE.dataStructures.MeasuredValue

getTimestamp() - Method in class edu.asu.cri.MirkE.dataStructures.DataPoint

Deprecated.

getTimestamp() - Method in class edu.asu.cri.MirkE.dataStructures.PlateDescription

getTimestamp() - Method in class edu.asu.cri.MirkE.dataStructures.PlateWellDataPoint

getTraceEnabled() - Static method in class edu.asu.cri.MirkE.trace.MirkE_ExceptionHandler

aspect tracing

getUnitAbbreviation() - Method in class edu.asu.cri.MirkE.dataStructures.Unit

getUnitConversionMultiplier() - Method in class edu.asu.cri.MirkE.dataStructures.Unit

getUnitConversionOffset() - Method in class edu.asu.cri.MirkE.dataStructures.Unit

getUnitField() - Method in class edu.asu.cri.MirkE.dataStructures.Unit

getUnitName() - Method in class edu.asu.cri.MirkE.dataStructures.Unit

getUnits() - Method in class edu.asu.cri.MirkE.dataStructures.UnitValue

getValue() - Method in class edu.asu.cri.MirkE.dataStructures.UnitValue

getWavelengthToCIE_XYZ() - Static method in class edu.asu.cri.MirkE.gui.DataSetColorModel

H

handleException(Throwable) - Method in class edu.asu.cri.MirkE.trace.MirkE_ExceptionHandler

handleException handles a throwable Exception the exception may or may not have a cause set.

handleException(String, Throwable) - Method in class edu.asu.cri.MirkE.trace.MirkE_ExceptionHandler

handleException extract and display the exception information

hashCode() - Method in class edu.asu.cri.MirkE.dataStructures.DataPoint

hashCode() - Method in class edu.asu.cri.MirkE.exceptions.MirkEApplicationException

Returns the hashcode of this instance

hashCode() - Method in class edu.asu.cri.MirkE.exceptions.MirkEFileNotFoundException

Returns the hashcode of this instance

hashCode() - Method in class edu.asu.cri.MirkE.exceptions.MirkEIOException

Returns the hashcode of this instance

hashCode() - Method in class edu.asu.cri.MirkE.exceptions.MirkESystemException

Returns the hashcode of this instance

I

IndexObservable - class edu.asu.cri.MirkE.dataStructures.IndexObservable.

IndexObservable() - Constructor for class edu.asu.cri.MirkE.dataStructures.IndexObservable

importDataSet() - Method in class edu.asu.cri.MirkE.gui.EventDispatcher

import a DataSet

initialize() - Method in class edu.asu.cri.MirkE.gui.PlateView

insertUpdate(DocumentEvent) - Method in class edu.asu.cri.MirkE.gui.PlateWellPropertySelectionWidget

isCompatible(Unit) - Method in class edu.asu.cri.MirkE.dataStructures.Unit

Method to know if two units are compatible.

isDebug(String) - Method in class edu.asu.cri.MirkE.trace.MirkELogger

isEditable() - Method in class edu.asu.cri.MirkE.dataStructures.UnitValue

L

listenerList - Variable in class edu.asu.cri.MirkE.gui.PlateView

load(String) - Static method in class edu.asu.cri.MirkE.io.VictorTextFileDataSetLoader

load a DataSet from a Victor text dump

load(File[]) - Static method in class edu.asu.cri.MirkE.io.VictorTextFileDataSetLoader

load a DataSet from a Victor text dump

load(File) - Static method in class edu.asu.cri.MirkE.io.VictorTextFileDataSetLoader

load a DataSet from a Victor text dump

load(File, DataSet) - Static method in class edu.asu.cri.MirkE.io.VictorTextFileDataSetLoader

load a DataSet from a Victor text dump

M

Magnitude - class edu.asu.cri.MirkE.dataStructures.Magnitude.

Magnitude() - Constructor for class edu.asu.cri.MirkE.dataStructures.Magnitude

Constructor for JavaBeans

Magnitude(String) - Constructor for class edu.asu.cri.MirkE.dataStructures.Magnitude

Constructor that sets up the magnitude's name.

MainFrame - class edu.asu.cri.MirkE.gui.MainFrame.

MainFrame() - Constructor for class edu.asu.cri.MirkE.gui.MainFrame

default constructor

MainFrame(MirkE) - Constructor for class edu.asu.cri.MirkE.gui.MainFrame

constructor with a DataSet

MeasuredValue - class edu.asu.cri.MirkE.dataStructures.MeasuredValue.

A UnitValue along with a first statistical moment (standard deviation) TODO - add support to store and propagate arbitrary moments

MeasuredValue() - Constructor for class edu.asu.cri.MirkE.dataStructures.MeasuredValue

default constructor

MeasuredValue(double, double, Unit) - Constructor for class edu.asu.cri.MirkE.dataStructures.MeasuredValue

constructor

MeasuredValue(Double, Double, Unit) - Constructor for class edu.asu.cri.MirkE.dataStructures.MeasuredValue

constructor

MeasuredValue(UnitValue) - Constructor for class edu.asu.cri.MirkE.dataStructures.MeasuredValue

constructor

MeasuredValueTest - class edu.asu.cri.MirkE.dataStructures.MeasuredValueTest.

MeasuredValueTest() - Constructor for class edu.asu.cri.MirkE.dataStructures.MeasuredValueTest

MenuActionListener - class edu.asu.cri.MirkE.gui.MenuActionListener.

This class is listener for all the menu options.

MenuActionListener() - Constructor for class edu.asu.cri.MirkE.gui.MenuActionListener

Empty constructor

MenuException - exception edu.asu.cri.MirkE.exceptions.MenuException.

This class is exception class for menu related exception

MenuException(String) - Constructor for class edu.asu.cri.MirkE.exceptions.MenuException

Constructor accepting the message

MenuException(String, Throwable) - Constructor for class edu.asu.cri.MirkE.exceptions.MenuException

Construct accepting the message and the caused by exception

MenuException(Throwable) - Constructor for class edu.asu.cri.MirkE.exceptions.MenuException

Constructor accepting the caused by exception

MenuItem - class edu.asu.cri.MirkE.menu.MenuItem.

This class represents a menu item

MenuItem() - Constructor for class edu.asu.cri.MirkE.menu.MenuItem

MenuList - class edu.asu.cri.MirkE.menu.MenuList.

This class represents a menu list containing child menu items/menu lists

MenuList() - Constructor for class edu.asu.cri.MirkE.menu.MenuList

MenuXMLParser - class edu.asu.cri.MirkE.menu.MenuXMLParser.

This class parses the menu.xml file of mirke

MenuXMLParser() - Constructor for class edu.asu.cri.MirkE.menu.MenuXMLParser

MetabolicAssayDataAnalyzer - class edu.asu.cri.MirkE.util.MetabolicAssayDataAnalyzer.

MetabolicAssayDataAnalyzer() - Constructor for class edu.asu.cri.MirkE.util.MetabolicAssayDataAnalyzer

parameter free constructor

MetabolicAssayDataAnalyzer(MirkE) - Constructor for class edu.asu.cri.MirkE.util.MetabolicAssayDataAnalyzer

MirkE - class edu.asu.cri.MirkE.MirkE.

MirkE - developed to facilitate simple (and not so simple) tasks for colormetric analysis assays

MirkE() - Constructor for class edu.asu.cri.MirkE.MirkE

default constructor // TODO - open to a simple spreadsheet like view

MirkE(String) - Constructor for class edu.asu.cri.MirkE.MirkE

MirkE(File[]) - Constructor for class edu.asu.cri.MirkE.MirkE

MirkEApplicationException - class edu.asu.cri.MirkE.exceptions.MirkEApplicationException.

MirkEApplicationException(String) - Constructor for class edu.asu.cri.MirkE.exceptions.MirkEApplicationException

Constructor with a message of the exception

MirkEApplicationException(String, Throwable) - Constructor for class edu.asu.cri.MirkE.exceptions.MirkEApplicationException

Constructor with a message of the exception

MirkEApplicationException(Throwable) - Constructor for class edu.asu.cri.MirkE.exceptions.MirkEApplicationException

Constructor with a message of the exception

MirkEFileNotFoundException - exception edu.asu.cri.MirkE.exceptions.MirkEFileNotFoundException.

MirkEFileNotFoundException(String) - Constructor for class edu.asu.cri.MirkE.exceptions.MirkEFileNotFoundException

Constructor with a message of the exception

MirkEFileNotFoundException() - Constructor for class edu.asu.cri.MirkE.exceptions.MirkEFileNotFoundException

Constructor with a message of the exception

MirkEFileNotFoundException(Throwable) - Constructor for class edu.asu.cri.MirkE.exceptions.MirkEFileNotFoundException

Constructor with a message of the exception

MirkEIOException - exception edu.asu.cri.MirkE.exceptions.MirkEIOException.

MirkEIOException(String) - Constructor for class edu.asu.cri.MirkE.exceptions.MirkEIOException

Constructor with a message of the exception

MirkEIOException(Throwable) - Constructor for class edu.asu.cri.MirkE.exceptions.MirkEIOException

Constructor with a message of the exception

MirkELogger - class edu.asu.cri.MirkE.trace.MirkELogger.

MirkELogger() - Constructor for class edu.asu.cri.MirkE.trace.MirkELogger

MirkELoggerFactory - class edu.asu.cri.MirkE.trace.MirkELoggerFactory.

MirkELoggerFactory() - Constructor for class edu.asu.cri.MirkE.trace.MirkELoggerFactory

MirkESystemException - class edu.asu.cri.MirkE.exceptions.MirkESystemException.

MirkESystemException(String) - Constructor for class edu.asu.cri.MirkE.exceptions.MirkESystemException

Constructor with a message of the exception

MirkESystemException(String, Throwable) - Constructor for class edu.asu.cri.MirkE.exceptions.MirkESystemException

Constructor with a message of the exception

MirkESystemException(Throwable) - Constructor for class edu.asu.cri.MirkE.exceptions.MirkESystemException

Constructor with a message of the exception

MirkESystemException(Throwable, boolean) - Constructor for class edu.asu.cri.MirkE.exceptions.MirkESystemException

Constructor with a message of the exception and indicator to tell the exception handler to call system exit

MirkESystemException(boolean) - Constructor for class edu.asu.cri.MirkE.exceptions.MirkESystemException

Constructor with a message of the exception and indicator to tell the exception handler to call system exit

MirkETransactionException - class edu.asu.cri.MirkE.exceptions.MirkETransactionException.

MirkETransactionException(String) - Constructor for class edu.asu.cri.MirkE.exceptions.MirkETransactionException

Constructor with a message of the exception

MirkETransactionException(Throwable, String) - Constructor for class edu.asu.cri.MirkE.exceptions.MirkETransactionException

Constructor with a message of the exception

MirkETransactionException(Throwable) - Constructor for class edu.asu.cri.MirkE.exceptions.MirkETransactionException

Constructor with a message of the exception

MirkE_ExceptionHandler - class edu.asu.cri.MirkE.trace.MirkE_ExceptionHandler.

Displays error messages to the user in a dialog box created has a getInstance factory method that returns a new instance of this dialog.

MirkE_ExceptionHandler() - Constructor for class edu.asu.cri.MirkE.trace.MirkE_ExceptionHandler

Creates a new MirkE_ExceptionHandler instance this parent dialog is set to modeltrue

MirkeContext - class edu.asu.cri.MirkE.gui.MirkeContext.

MirkeContext() - Constructor for class edu.asu.cri.MirkE.gui.MirkeContext

MirkeMessages - class edu.asu.cri.MirkE.util.MirkeMessages.

This class hanles all the locale specific information that is to be presented.

MirkeMessages() - Constructor for class edu.asu.cri.MirkE.util.MirkeMessages

MirkeProperties - class edu.asu.cri.MirkE.util.MirkeProperties.

This is a kind of singleton class for holding all the application level properties configured for MirkE

MirkeProperties() - Constructor for class edu.asu.cri.MirkE.util.MirkeProperties

main(String[]) - Static method in class edu.asu.cri.MirkE.Client

main(String[]) - Static method in class edu.asu.cri.MirkE.MirkE

main(String[]) - Static method in class edu.asu.cri.MirkE.dataStructures.DataSetTest

main(String[]) - Static method in class edu.asu.cri.MirkE.dataStructures.MeasuredValueTest

main(String[]) - Static method in class edu.asu.cri.MirkE.dataStructures.UnitTest

metabolicAssays() - Method in class edu.asu.cri.MirkE.gui.EventDispatcher

mouseClicked(MouseEvent) - Method in class edu.asu.cri.MirkE.gui.WellButton

mouseEntered(MouseEvent) - Method in class edu.asu.cri.MirkE.gui.WellButton

mouseExited(MouseEvent) - Method in class edu.asu.cri.MirkE.gui.WellButton

mousePressed(MouseEvent) - Method in class edu.asu.cri.MirkE.gui.WellButton

mouseReleased(MouseEvent) - Method in class edu.asu.cri.MirkE.gui.WellButton

multiply(double) - Method in class edu.asu.cri.MirkE.dataStructures.MeasuredValue

multiply a double to this and return the product

multiply(MeasuredValue) - Method in class edu.asu.cri.MirkE.dataStructures.MeasuredValue

multiply a MeasuredValue to this and return the product

O

Observable - class edu.asu.cri.MirkE.dataStructures.Observable.

An Observable is a property that can be measured or otherwise observed ('time'; 'concentration'; 'absorbance at 570nm'; etc).

Observable() - Constructor for class edu.asu.cri.MirkE.dataStructures.Observable

default constructor

Observable(String) - Constructor for class edu.asu.cri.MirkE.dataStructures.Observable

constructor

ObservableFactory - class edu.asu.cri.MirkE.util.ObservableFactory.

Simple utility class to prevent duplication of Observable objects TODO - depreciate / remove this class by using features of Hibernate with a non-unique key (like Observable.name)

ObservableFactory() - Constructor for class edu.asu.cri.MirkE.util.ObservableFactory

default constructor

ObservableFactory(DataSet) - Constructor for class edu.asu.cri.MirkE.util.ObservableFactory

constructor

observableToMeanValueMapToColor(Map) - Static method in class edu.asu.cri.MirkE.gui.DataSetColorModel

P

PerWellDataAnalyzer - class edu.asu.cri.MirkE.util.PerWellDataAnalyzer.

PerWellDataAnalyzer(MirkE) - Constructor for class edu.asu.cri.MirkE.util.PerWellDataAnalyzer

preferred constructor

PlateDescription - class edu.asu.cri.MirkE.dataStructures.PlateDescription.

PlateDescription() - Constructor for class edu.asu.cri.MirkE.dataStructures.PlateDescription

PlateView - class edu.asu.cri.MirkE.gui.PlateView.

A viewer for multiwell plates used to represent colormetric data and to allow users to select which well(s) belong to a specific group

PlateView(MirkE, String) - Constructor for class edu.asu.cri.MirkE.gui.PlateView

constructor

PlateViewEvent - class edu.asu.cri.MirkE.gui.PlateViewEvent.

PlateViewEvent() - Constructor for class edu.asu.cri.MirkE.gui.PlateViewEvent

zero parameter constructor

PlateViewEvent(PlateView) - Constructor for class edu.asu.cri.MirkE.gui.PlateViewEvent

constructor

PlateViewEventListener - interface edu.asu.cri.MirkE.gui.PlateViewEventListener.

PlateWellCategory - class edu.asu.cri.MirkE.dataStructures.PlateWellCategory.

PlateWellCategory() - Constructor for class edu.asu.cri.MirkE.dataStructures.PlateWellCategory

parameter free constructor

PlateWellCategory(String, String, String, String) - Constructor for class edu.asu.cri.MirkE.dataStructures.PlateWellCategory

PlateWellDataPoint - class edu.asu.cri.MirkE.dataStructures.PlateWellDataPoint.

TODO - absorb DataPoint into an abstract class and make this a subclass of it

PlateWellDataPoint() - Constructor for class edu.asu.cri.MirkE.dataStructures.PlateWellDataPoint

PlateWellDescriptor - class edu.asu.cri.MirkE.dataStructures.PlateWellDescriptor.

PlateWellDescriptor() - Constructor for class edu.asu.cri.MirkE.dataStructures.PlateWellDescriptor

PlateWellPropertySelectionWidget - class edu.asu.cri.MirkE.gui.PlateWellPropertySelectionWidget.

A viewer for multiwell plates used to represent colormetric data and to allow users to select which well(s) belong to a specific group

PlateWellPropertySelectionWidget(MirkE) - Constructor for class edu.asu.cri.MirkE.gui.PlateWellPropertySelectionWidget

constructor

PlateWellPropertySelectionWidget(MirkE, Vector) - Constructor for class edu.asu.cri.MirkE.gui.PlateWellPropertySelectionWidget

constructor

paintComponent(Graphics) - Method in class edu.asu.cri.MirkE.gui.WellButton

parseObservableWavelengthAndType(String) - Static method in class edu.asu.cri.MirkE.io.VictorTextFileDataSetLoader

performAction(ActionEvent) - Method in class edu.asu.cri.MirkE.gui.PlateWellPropertySelectionWidget

plateViewChanged(PlateViewEvent) - Method in interface edu.asu.cri.MirkE.gui.PlateViewEventListener

plateViewChanged(PlateViewEvent) - Method in class edu.asu.cri.MirkE.gui.WellButton

plateViewEvent - Variable in class edu.asu.cri.MirkE.gui.PlateView

plotGrowthCurves() - Method in class edu.asu.cri.MirkE.gui.EventDispatcher

plot growth curves

printStackTrace(PrintStream) - Method in class edu.asu.cri.MirkE.exceptions.MenuException

Overloading the print stacktrace so that it will print the stack trace of causedby exception also

processAndGuessLabelWavelengths(DataSet, Vector, Map) - Static method in class edu.asu.cri.MirkE.io.VictorTextFileDataSetLoader

R

raiseToPower(double) - Method in class edu.asu.cri.MirkE.dataStructures.MeasuredValue

return the nth power of this MeasuredValue

removeDataPoint(DataPoint) - Method in class edu.asu.cri.MirkE.dataStructures.DataPointCategory

removePlateViewListener(PlateViewEventListener) - Method in class edu.asu.cri.MirkE.gui.PlateView

Remove a listener (no longer notify it of changes to an instance of the PlateView).

removeTabPanel(String) - Method in class edu.asu.cri.MirkE.gui.PlateWellPropertySelectionWidget

removeUpdate(DocumentEvent) - Method in class edu.asu.cri.MirkE.gui.PlateWellPropertySelectionWidget

rowNumberToLabel(int) - Method in class edu.asu.cri.MirkE.dataStructures.DataSet

rowNumberToLabel(int) - Method in class edu.asu.cri.MirkE.gui.PlateView

S

save(Object) - Method in class edu.asu.cri.MirkE.dataStructures.DataSet

save an Object to the DataSet

saveDataPointCategories() - Method in class edu.asu.cri.MirkE.dataStructures.DataPointCategoryFactory

ensure that all DataPointCategory(ies) have been saved

scale - Variable in class edu.asu.cri.MirkE.MirkE

Comment for scale

scheduleInitialization() - Method in class edu.asu.cri.MirkE.gui.MainFrame

scheduleInitialization() - Method in class edu.asu.cri.MirkE.util.MetabolicAssayDataAnalyzer

setAccessKeyStroke(String) - Method in class edu.asu.cri.MirkE.menu.MenuItem

sets access key stroke

setAccessKeyStroke(String) - Method in class edu.asu.cri.MirkE.menu.MenuList

sets access key stroke

setCategoryName(String) - Method in class edu.asu.cri.MirkE.dataStructures.DataPointCategory

setCategoryName(String) - Method in class edu.asu.cri.MirkE.dataStructures.PlateWellCategory

setCategorySet(Set) - Method in class edu.asu.cri.MirkE.dataStructures.DataPointCategory

setCategoryType(String) - Method in class edu.asu.cri.MirkE.dataStructures.DataPointCategory

setClassName(String) - Method in class edu.asu.cri.MirkE.menu.MenuItem

sets class name

setConfiguration(Configuration) - Method in class edu.asu.cri.MirkE.dataStructures.DataSet

set the Hibernate configuration

setConnection(Connection) - Method in class edu.asu.cri.MirkE.dataStructures.DataSet

set the SQL database connection

setCurrentDirectory(File) - Static method in class edu.asu.cri.MirkE.gui.MirkeContext

sets current directory

setDataSet(DataSet) - Method in class edu.asu.cri.MirkE.MirkE

setDataSet(DataSet) - Method in class edu.asu.cri.MirkE.dataStructures.DataPointCategoryFactory

setDataSet(DataSet) - Method in class edu.asu.cri.MirkE.util.ObservableFactory

setDescriptorMap(Map) - Method in class edu.asu.cri.MirkE.dataStructures.DataPoint

Deprecated.

setEditable(boolean) - Method in class edu.asu.cri.MirkE.dataStructures.UnitValue

setErrorMapRequired(boolean, long) - Static method in class edu.asu.cri.MirkE.trace.MirkE_ExceptionHandler

A new instance of mirke has been created so we need a new map for the errors generated by this instance

setEventDispatcher(EventDispatcher) - Method in class edu.asu.cri.MirkE.MirkE

setId(long) - Method in class edu.asu.cri.MirkE.dataStructures.DataPoint

setId(long) - Method in class edu.asu.cri.MirkE.dataStructures.DataPointCategory

setId(long) - Method in class edu.asu.cri.MirkE.dataStructures.Magnitude

setId(long) - Method in class edu.asu.cri.MirkE.dataStructures.Observable

setId(long) - Method in class edu.asu.cri.MirkE.dataStructures.PlateDescription

setId(long) - Method in class edu.asu.cri.MirkE.dataStructures.PlateWellCategory

setId(long) - Method in class edu.asu.cri.MirkE.dataStructures.PlateWellDataPoint

setId(long) - Method in class edu.asu.cri.MirkE.dataStructures.PlateWellDescriptor

setId(long) - Method in class edu.asu.cri.MirkE.dataStructures.Unit

setId(long) - Method in class edu.asu.cri.MirkE.dataStructures.UnitValue

setMainFrame(MainFrame) - Method in class edu.asu.cri.MirkE.MirkE

setMethodName(String) - Method in class edu.asu.cri.MirkE.menu.MenuItem

sets method name

setMirke(MirkE) - Method in class edu.asu.cri.MirkE.gui.EventDispatcher

setMirke(MirkE) - Method in class edu.asu.cri.MirkE.gui.MainFrame

setMirke(MirkE) - Static method in class edu.asu.cri.MirkE.gui.MirkeContext

sets mirke object

setMirke(MirkE) - Method in class edu.asu.cri.MirkE.gui.PlateView

setMirke(MirkE) - Method in class edu.asu.cri.MirkE.gui.WellButton

setMirke(MirkE) - Method in class edu.asu.cri.MirkE.util.DataAnalyzer

setMyMessage(String) - Method in class edu.asu.cri.MirkE.exceptions.MirkESystemException

setName(String) - Method in class edu.asu.cri.MirkE.dataStructures.Magnitude

setName(String) - Method in class edu.asu.cri.MirkE.dataStructures.Observable

setName(String) - Method in class edu.asu.cri.MirkE.menu.MenuItem

sets item name

setName(String) - Method in class edu.asu.cri.MirkE.menu.MenuList

sets item name

setNameKey(String) - Method in class edu.asu.cri.MirkE.menu.MenuItem

sets item name key

setNameKey(String) - Method in class edu.asu.cri.MirkE.menu.MenuList

sets item name key

setNumberOfColumns(int) - Method in class edu.asu.cri.MirkE.dataStructures.PlateDescription

setNumberOfRows(int) - Method in class edu.asu.cri.MirkE.dataStructures.PlateDescription

setObservableName(String) - Method in class edu.asu.cri.MirkE.dataStructures.PlateWellDataPoint

setObservableToMeasuredValueMap(Map) - Method in class edu.asu.cri.MirkE.dataStructures.DataPoint

setObservedUnits(String) - Method in class edu.asu.cri.MirkE.dataStructures.PlateWellDataPoint

setObservedValue(double) - Method in class edu.asu.cri.MirkE.dataStructures.PlateWellDataPoint

setParent(Component) - Method in class edu.asu.cri.MirkE.trace.MirkE_ExceptionHandler

set the parent for this Component of this exception handler

setPlateColumn(String) - Method in class edu.asu.cri.MirkE.dataStructures.PlateWellCategory

setPlateColumn(String) - Method in class edu.asu.cri.MirkE.dataStructures.PlateWellDataPoint

setPlateColumn(String) - Method in class edu.asu.cri.MirkE.dataStructures.PlateWellDescriptor

setPlateColumnLabel(String) - Method in class edu.asu.cri.MirkE.gui.WellButton

setPlateIdentifier(String) - Method in class edu.asu.cri.MirkE.dataStructures.PlateDescription

setPlateIdentifier(String) - Method in class edu.asu.cri.MirkE.dataStructures.PlateWellCategory

setPlateIdentifier(String) - Method in class edu.asu.cri.MirkE.dataStructures.PlateWellDataPoint

setPlateIdentifier(String) - Method in class edu.asu.cri.MirkE.dataStructures.PlateWellDescriptor

setPlateRow(String) - Method in class edu.asu.cri.MirkE.dataStructures.PlateWellCategory

setPlateRow(String) - Method in class edu.asu.cri.MirkE.dataStructures.PlateWellDataPoint

setPlateRow(String) - Method in class edu.asu.cri.MirkE.dataStructures.PlateWellDescriptor

setPlateRowLabel(String) - Method in class edu.asu.cri.MirkE.gui.WellButton

setPlateView(PlateView) - Method in class edu.asu.cri.MirkE.gui.PlateViewEvent

setPlateWellType(String) - Method in class edu.asu.cri.MirkE.dataStructures.PlateWellDescriptor

setSelectableParameter(String) - Method in class edu.asu.cri.MirkE.gui.PlateView

setSelectableParameter(String) - Method in class edu.asu.cri.MirkE.gui.WellButton

setSessionFactory(SessionFactory) - Method in class edu.asu.cri.MirkE.dataStructures.DataSet

set the Hibernate sessionFactory

setStandardDeviation(double) - Method in class edu.asu.cri.MirkE.dataStructures.MeasuredValue

setTimestamp(Timestamp) - Method in class edu.asu.cri.MirkE.dataStructures.DataPoint

Deprecated.

setTimestamp(Timestamp) - Method in class edu.asu.cri.MirkE.dataStructures.PlateDescription

setTimestamp(Timestamp) - Method in class edu.asu.cri.MirkE.dataStructures.PlateWellDataPoint

setTraceEnabled(boolean) - Static method in class edu.asu.cri.MirkE.trace.MirkE_ExceptionHandler

enable aspect tracing

setUnitAbbreviation(String) - Method in class edu.asu.cri.MirkE.dataStructures.Unit

setUnits(Unit) - Method in class edu.asu.cri.MirkE.dataStructures.UnitValue

setUp() - Method in class edu.asu.cri.MirkE.dataStructures.DataSetTest

setUp() - Method in class edu.asu.cri.MirkE.dataStructures.MeasuredValueTest

setUp() - Method in class edu.asu.cri.MirkE.dataStructures.UnitTest

setValue(double) - Method in class edu.asu.cri.MirkE.dataStructures.UnitValue

showMe() - Method in class edu.asu.cri.MirkE.trace.MirkE_ExceptionHandler

showPerWellAnalysis() - Method in class edu.asu.cri.MirkE.gui.EventDispatcher

stdevFromListAndMean(List, double) - Static method in class edu.asu.cri.MirkE.util.DataAnalyzer

storeUnitValueForObservable(Object, UnitValue) - Method in class edu.asu.cri.MirkE.dataStructures.DataPoint

subtract(UnitValue) - Method in class edu.asu.cri.MirkE.dataStructures.MeasuredValue

add a MeasuredValue to this and return the sum (if it exists)

subtract(MeasuredValue) - Method in class edu.asu.cri.MirkE.dataStructures.MeasuredValue

subtract a MeasuredValue from this and return the difference (if it exists)

T

tearDown() - Method in class edu.asu.cri.MirkE.dataStructures.DataSetTest

tearDown() - Method in class edu.asu.cri.MirkE.dataStructures.MeasuredValueTest

tearDown() - Method in class edu.asu.cri.MirkE.dataStructures.UnitTest

testAdd() - Method in class edu.asu.cri.MirkE.dataStructures.MeasuredValueTest

testConvertTo() - Method in class edu.asu.cri.MirkE.dataStructures.UnitTest

testDelete() - Method in class edu.asu.cri.MirkE.dataStructures.DataSetTest

testDivide() - Method in class edu.asu.cri.MirkE.dataStructures.MeasuredValueTest

testEquals() - Method in class edu.asu.cri.MirkE.dataStructures.UnitTest

testFind() - Method in class edu.asu.cri.MirkE.dataStructures.DataSetTest

testIsCompatible() - Method in class edu.asu.cri.MirkE.dataStructures.UnitTest

testMultiplyMeasuredValue() - Method in class edu.asu.cri.MirkE.dataStructures.MeasuredValueTest

Class under test for MeasuredValue multiply(MeasuredValue)

testRaiseToPower() - Method in class edu.asu.cri.MirkE.dataStructures.MeasuredValueTest

testSave() - Method in class edu.asu.cri.MirkE.dataStructures.DataSetTest

testSaveMeasuredValue() - Method in class edu.asu.cri.MirkE.dataStructures.DataSetTest

testSaveUnit() - Method in class edu.asu.cri.MirkE.dataStructures.DataSetTest

testSaveUnitValue() - Method in class edu.asu.cri.MirkE.dataStructures.DataSetTest

testSubtract() - Method in class edu.asu.cri.MirkE.dataStructures.MeasuredValueTest

toColor(MirkE, String) - Static method in class edu.asu.cri.MirkE.gui.DataSetColorModel

toColor(MirkE, Map, Map, Map) - Static method in class edu.asu.cri.MirkE.gui.DataSetColorModel

toString() - Method in class edu.asu.cri.MirkE.dataStructures.DataPoint

toString() - Method in class edu.asu.cri.MirkE.dataStructures.MeasuredValue

toString() - Method in class edu.asu.cri.MirkE.dataStructures.Observable

toString() - Method in class edu.asu.cri.MirkE.dataStructures.PlateDescription

toString() - Method in class edu.asu.cri.MirkE.dataStructures.PlateWellCategory

toString() - Method in class edu.asu.cri.MirkE.dataStructures.PlateWellDataPoint

toString() - Method in class edu.asu.cri.MirkE.dataStructures.PlateWellDescriptor

toString() - Method in class edu.asu.cri.MirkE.dataStructures.Unit

toString() - Method in class edu.asu.cri.MirkE.dataStructures.UnitValue

toString() - Method in class edu.asu.cri.MirkE.exceptions.MirkEApplicationException

Describes the instance and its content for debugging purpose

toString() - Method in class edu.asu.cri.MirkE.exceptions.MirkEFileNotFoundException

Describes the instance and its content for debugging purpose

toString() - Method in class edu.asu.cri.MirkE.exceptions.MirkEIOException

Describes the instance and its content for debugging purpose

toString() - Method in class edu.asu.cri.MirkE.exceptions.MirkESystemException

Describes the instance and its content for debugging purpose

toTimestamp(String) - Static method in class edu.asu.cri.MirkE.io.VictorTextFileDataSetLoader

toVector(float[]) - Static method in class edu.asu.cri.MirkE.gui.DataSetColorModel

Simple conversion from an array of floats to a Vector

toggleWellState() - Method in class edu.asu.cri.MirkE.gui.WellButton

U

Unit - class edu.asu.cri.MirkE.dataStructures.Unit.

Unit() - Constructor for class edu.asu.cri.MirkE.dataStructures.Unit

Parameter-free JavaBean constructor (for Hibernate)

UnitTest - class edu.asu.cri.MirkE.dataStructures.UnitTest.

UnitTest(String) - Constructor for class edu.asu.cri.MirkE.dataStructures.UnitTest

Constructor for UnitTest.

UnitValue - class edu.asu.cri.MirkE.dataStructures.UnitValue.

storage for a scalar (double) value and an associated Unit TODO - replace the scalar with an arbitrary Object (will take too much time to develope with hibernate for now)

UnitValue() - Constructor for class edu.asu.cri.MirkE.dataStructures.UnitValue

default constructor

UnitValue(double, Unit) - Constructor for class edu.asu.cri.MirkE.dataStructures.UnitValue

constructor

update() - Method in class edu.asu.cri.MirkE.gui.WellButton

update the WellButton to reflect the current state of the DataSet

updateToolTipText() - Method in class edu.asu.cri.MirkE.gui.WellButton

V

VictorTextFileDataSetLoader - class edu.asu.cri.MirkE.io.VictorTextFileDataSetLoader.

Reads a text file generated by Victor's software (TODO - find its name) and returns a DataSet

VictorTextFileDataSetLoader() - Constructor for class edu.asu.cri.MirkE.io.VictorTextFileDataSetLoader

W

WellButton - class edu.asu.cri.MirkE.gui.WellButton.

WellButton(MirkE, String, String, String, String) - Constructor for class edu.asu.cri.MirkE.gui.WellButton

preferred constructor

warning(String, String) - Method in class edu.asu.cri.MirkE.trace.MirkELogger

log the information of the method entry joinpoint

wavelengthToCIE_XYZcomponents(Integer) - Static method in class edu.asu.cri.MirkE.gui.DataSetColorModel

wavelengthToColor(double, double) - Static method in class edu.asu.cri.MirkE.gui.DataSetColorModel

Convert from a wavelength of monochromatic light to an approximate Color

wavelengthToColor(Integer, double) - Static method in class edu.asu.cri.MirkE.gui.DataSetColorModel

Convert from a wavelength of monochromatic light to an approximate Color

wavelengthToColor(Integer, float) - Static method in class edu.asu.cri.MirkE.gui.DataSetColorModel

Convert from a wavelength of monochromatic light to an approximate Color

X

xyzToColor(float[]) - Static method in class edu.asu.cri.MirkE.gui.DataSetColorModel

Convert from XYZ values to a Color

xyzToColor(float[], float) - Static method in class edu.asu.cri.MirkE.gui.DataSetColorModel

Convert from XYZ values to a Color

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