Uses of Class
edu.asu.cri.MirkE.exceptions.MirkEApplicationException

Packages that use MirkEApplicationException

edu.asu.cri.MirkE
edu.asu.cri.MirkE.dataStructures
edu.asu.cri.MirkE.exceptions
edu.asu.cri.MirkE.gui
edu.asu.cri.MirkE.io
edu.asu.cri.MirkE.util

Uses of MirkEApplicationException in edu.asu.cri.MirkE

Constructors in edu.asu.cri.MirkE that throw MirkEApplicationException

MirkE(java.lang.String filename)

MirkE(java.io.File[] files)

Uses of MirkEApplicationException in edu.asu.cri.MirkE.dataStructures

Methods in edu.asu.cri.MirkE.dataStructures that throw MirkEApplicationException

net.sf.hibernate.Session	DataSet.getSession()
void	DataSet.save(java.lang.Object object) save an Object to the DataSet
java.util.Set	DataSet.getObservables()
java.util.Set	DataSet.getPlateIdentifiers()
java.util.Set	DataSet.getCategoryNames()
void	DataSet.computePlateDimensions() Determine and set the numberOfRows and numberOfColumns of the plate // TODO - refactor this out into another class (probably a subclass of DataSet -> MultiwellPlateDataSet)
java.util.Vector	DataSet.getMeasuredPlateRowColumnVector()
java.util.List	DataSet.find(java.lang.String query) execute a database query on the DataSet
DataPointCategory	DataPointCategoryFactory.getDataPointCategory(java.lang.String categoryName, java.lang.String categoryType)

Uses of MirkEApplicationException in edu.asu.cri.MirkE.exceptions

Subclasses of MirkEApplicationException in edu.asu.cri.MirkE.exceptions

class

MirkETransactionException

Uses of MirkEApplicationException in edu.asu.cri.MirkE.gui

Methods in edu.asu.cri.MirkE.gui that throw MirkEApplicationException

void	WellButton.setMirke(MirkE mirke)
void	WellButton.update() update the WellButton to reflect the current state of the DataSet
void	WellButton.toggleWellState()
void	PlateWellPropertySelectionWidget.createPlateWellPropertySelectionWidgetGUI()
void	PlateWellPropertySelectionWidget.addTabPanel(java.lang.String selectableParameter)
void	PlateWellPropertySelectionWidget.performAction(java.awt.event.ActionEvent actionEvent)
void	PlateView.initialize()
void	PlateView.createPlateViewGUI()
void	MainFrame.createAndShow() create the JFrame, populate the JMenuBar and Pane then show the window
void	EventDispatcher.importDataSet() import a DataSet
void	EventDispatcher.plotGrowthCurves() plot growth curves
void	EventDispatcher.metabolicAssays()
void	EventDispatcher.showPerWellAnalysis()
static float[]	DataSetColorModel.wavelengthToCIE_XYZcomponents(java.lang.Integer wavelength)
static java.awt.Color	DataSetColorModel.wavelengthToColor(double wavelength, double alpha) Convert from a wavelength of monochromatic light to an approximate Color
static java.awt.Color	DataSetColorModel.wavelengthToColor(java.lang.Integer wavelength, double alpha) Convert from a wavelength of monochromatic light to an approximate Color
static java.awt.Color	DataSetColorModel.xyzToColor(float[] xyzValues) Convert from XYZ values to a Color
static java.awt.Color	DataSetColorModel.xyzToColor(float[] xyzValues, float alpha) Convert from XYZ values to a Color
static java.awt.Color	DataSetColorModel.wavelengthToColor(java.lang.Integer wavelength, float alpha) Convert from a wavelength of monochromatic light to an approximate Color
static java.awt.Color	DataSetColorModel.observableToMeanValueMapToColor(java.util.Map observableToMeanValueMap)

Constructors in edu.asu.cri.MirkE.gui that throw MirkEApplicationException

WellButton(MirkE mirke, java.lang.String plateRowLabel, java.lang.String plateColumnLabel, java.lang.String plateWellType, java.lang.String selectableParameter)
preferred constructor

PlateWellPropertySelectionWidget(MirkE mirke)
constructor

PlateWellPropertySelectionWidget(MirkE mirke, java.util.Vector selectableParameters)
constructor

PlateView(MirkE mirke, java.lang.String selectableParameter)
constructor

Uses of MirkEApplicationException in edu.asu.cri.MirkE.io

Methods in edu.asu.cri.MirkE.io that throw MirkEApplicationException

static DataSet	VictorTextFileDataSetLoader.load(java.lang.String filename) load a DataSet from a Victor text dump
static DataSet	VictorTextFileDataSetLoader.load(java.io.File[] files) load a DataSet from a Victor text dump
static DataSet	VictorTextFileDataSetLoader.load(java.io.File file) load a DataSet from a Victor text dump
static DataSet	VictorTextFileDataSetLoader.load(java.io.File file, DataSet dataSet) load a DataSet from a Victor text dump
static void	VictorTextFileDataSetLoader.processAndGuessLabelWavelengths(DataSet dataSet, java.util.Vector observables, java.util.Map protocolDescriptionMap)

Uses of MirkEApplicationException in edu.asu.cri.MirkE.util

Methods in edu.asu.cri.MirkE.util that throw MirkEApplicationException

void	PerWellDataAnalyzer.computeAndDisplayPerWellMeans()
Observable	ObservableFactory.getObservable(java.lang.String name)
void	MetabolicAssayDataAnalyzer.scheduleInitialization()
void	MetabolicAssayDataAnalyzer.createAndShow()
void	MetabolicAssayDataAnalyzer.computeMetabolicPercentConverted()
void	GrowthCurveDataAnalyzer.computeGrowthCurves() this method needs *a lot* of work (and really should be made internal / pure Java)

Constructors in edu.asu.cri.MirkE.util that throw MirkEApplicationException

MetabolicAssayDataAnalyzer()
parameter free constructor

MetabolicAssayDataAnalyzer(MirkE mirke)

AlamarBlueMetabolicAssayDataAnalyzer(MirkE mirke)
preferred constructor